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HelpTest Code ACARP Acanthamoeba species Molecular Detection, PCR, Ocular
Useful For
Aids in the diagnosis of amebic keratitis in conjunction with clinical findings
Reporting Name
Acanthamoeba species Detection, PCRSpecimen Type
VariesOrdering Guidance
Although verification experiments did not detect Acanthamoeba species DNA in contact lenses from asymptomatic adults, it is possible that the polymerase chain reaction may detect asymptomatic colonization/contamination and, therefore, testing should not be performed on asymptomatic individuals.
Necessary Information
1. Specimen source is required.
2. Source information should include main anatomical site of collection.
3. If submitting scrapings or swabs, specify which collection device was used (ie, scalpel or swab).
Specimen Required
The preferred specimen for this test is corneal scraping or biopsy.
Submit only 1 of the following specimens:
Specimen Type: Tissue (fresh)
Sources: Ocular
Container/Tube: Sterile container
Specimen Volume: 5-10 mm
Collection Instructions: Submit tissue in a sterile container with 1 mL of sterile saline, minimal essential media (MEM), or viral transport media.
Preferred Paraffin-Embedded Tissue Block:
Supplies: Tissue Block Container (T553)
Specimen Type: Formalin-fixed, paraffin-embedded tissue block (FFPE)
Sources: Ocular
Container/Tube: Tissue block
Collection Instructions: Submit a FFPE tissue block to be cut and returned.
Acceptable Paraffin-Embedded Tissue Block:
Specimen Type: FFPE section
Sources: Ocular
Container/Tube: Sterile container for each individual cut section (scroll).
Collection Instructions: Perform microtomy and prepare five separate 10-micron sections. Each section (scroll) must be placed in a separate sterile container for submission.
Specimen Type: Scrapings
Sources: Eye, ocular, cornea
Container/Tube: Sterile container
Specimen Volume: 1 mL
Collection Instructions:
1. Collect corneal scrapings using a scalpel or other sharp device to remove the outer layer of cells from the eye.
2. Swish the collection device in 1 mL of sterile saline, MEM, or viral transport media.
3. Remove the scalpel blade or sharp device from the collection container before submitting to the lab.
4. Specimens containing scalpel blades will be canceled.
Specimen Type: Swabs
Sources: Eye, ocular, cornea
Container/Tube: Sterile container
Specimen Volume: 1 mL
Collection Instructions:
1. Swab must be placed into viral transport media and submitted with the specimen.
2. Specimens received without swabs will be canceled.
Additional Information: Swabs are not the preferred specimen for this test and may yield false-negative results.
Specimen Type: Contact lenses
Container/Tube: Sterile container
Specimen Volume: Entire collection
Collection Instructions:
1. Place entire contact lens in a sterile container with 1 mL sterile saline, viral transport media, or MEM.
2. Right and left lenses must be submitted individually using multiple sterile containers or in the original contact lens case. A separate order must be created for each lens being tested.
3. Indicate Right or Left in the specimen source.
Specimen Type: Contact lens cases without lenses
Container/Tube: Sterile container
Specimen Volume: 1 mL solution or entire case
Additional Information:
1. Depending on the type of case submitted, it may be necessary to test right and left chambers individually. A separate order must be created for each chamber being tested.
2. Indicate Right or Left in the specimen source.
Specimen Minimum Volume
Scrapings: 0.5 mL; Other specimen types: See Specimen Required
Specimen Stability Information
| Specimen Type | Temperature | Time | Special Container |
|---|---|---|---|
| Varies | Refrigerated (preferred) | 7 days | |
| Frozen | 7 days |
Reject Due To
| Calcium alginate-tipped swab Wood swab Transport swab containing gel Specimens containing scalpel blades Unstained slides |
Reject |
Reference Values
Negative
Supportive Data
The following assay verification data supports the use of this assay for clinical testing.
Species Inclusivity:
The Acanthamoeba polymerase chain reaction (PCR) assay detected all 20 strains of Acanthamoeba that were included in the validation study, including genotypes that cause human disease.
Accuracy/Diagnostic Sensitivity and Specificity-Fresh Specimens:
Results from this PCR assay detecting the 18S ribosomal RNA gene of Acanthamoeba species were compared to culture results on 112 contact/ocular specimens. Of the 12 specimens that were positive by culture, 11 were detected by PCR (sensitivity 92%). PCR also detected an additional 2 positive specimens, which were both from the same patient with a clinical diagnosis of amebic keratitis (AK), thus indicating that they were true positive results. Ninety-eight specimens were negative by both culture and PCR.
Accuracy/Diagnostic Sensitivity and Specificity-Formalin-Fixed Paraffin-Embedded Specimens:
Twenty-four formalin-fixed paraffin embedded (FFPE) archived tissue blocks (up to 34 years old) were tested by the Acanthamoeba species PCR assay and results were compared to histopathologic (light microscopic) diagnosis. Fourteen of the tissues had a morphologic diagnosis of Acanthamoeba keratitis; of these, 11 were positive by PCR (sensitivity 79%). The three falsely negative specimens had scant amounts of tissue in the blocks and may no longer have contained diagnostic tissue. Ten specimens were negative by both histopathology and PCR (specificity 100%).
Supplemental Accuracy Data:
Spiking studies were performed using ocular material in transport media (contact lens fluid, minimal essential media), fresh tissue, and FFPE tissue spiked with Acanthamoeba genomic DNA at an approximate concentration of 50 targets/mcL. All samples were then extracted and tested in a blinded fashion. At 50 targets/mcL, 100% of the ocular material, the fresh, and the FFPE tissue were positive by PCR.
Analytical Sensitivity/Limit of Detection:
-The limit of detection (LOD) determined with serial dilution of cultured Acanthamoeba cysts (counted using a hemocytometer) is 1 cyst per processed sample.
-The LOD established using genomic DNA spiked into contact lens solution/minimal essential transport media is 1.26 target copies/mcL.
-The LOD established using genomic DNA spiked into fresh tissue matrix is 6.5 target copies/mcL.
-The LOD established using genomic DNA spiked into FFPE tissue matrix is 5.7 target copies/mcL.
Analytical Specificity:
No PCR signal was obtained from the extracts of 47 bacterial, viral, parasitic, and fungal isolates from similar organisms or from organisms commonly found in the specimens tested.
Precision:
Qualitative inter- and intra-assay precision was 100%. All crossing point values were within 2 cycles of the mean.
Reference Range:
The reference range is "Negative" for this assay. PCR and culture performed on 291 contact lenses from asymptomatic individuals failed to detect Acanthamoeba DNA or growth.
However, PCR may detect Acanthamoeba species colonization due to the widespread distribution of this free-living ameba in the environment, and PCR testing should only be used for patients with a clinical history and ocular symptoms consistent with AK.
Reportable Range:
This is a qualitative assay, and the results are reported as negative or positive for targeted Acanthamoeba species
Day(s) Performed
Monday through Sunday
Report Available
2 to 3 daysSpecimen Retention Time
7 daysPerforming Laboratory
Mayo Clinic Laboratories in Rochester
CPT Code Information
87798
LOINC Code Information
| Test ID | Test Order Name | Order LOINC Value |
|---|---|---|
| ACARP | Acanthamoeba species Detection, PCR | 41429-2 |
| Result ID | Test Result Name | Result LOINC Value |
|---|---|---|
| SRCAS | Specimen Source | 31208-2 |
| 38058 | Acanthamoeba species PCR | 41429-2 |
Forms
If not ordering electronically, complete, print, and send a Microbiology Test Request (T244) with the specimen.