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Test Code CDPCR Clostridioides difficile Toxin, PCR, Feces


Ordering Guidance


This test is validated for unformed (liquid or soft) fecal specimens collected from patients suspected of having Clostridioides difficile infection.



Specimen Required


The high sensitivity of amplification by polymerase chain reaction requires the specimen to be processed in an environment in which contamination of the specimen by Clostridioides difficile toxin DNA is unlikely.

 

Submit only 1 of the following specimens:

 

Preferred:

Specimen Type: Preserved feces

Supplies: Culture and Sensitivity Stool Transport Vial (T058)

Container/Tube: Commercially available transport system specific for recovery of enteric pathogens from fecal specimens (15 mL of nonnutritive transport medium containing phenol red as a pH indicator, either Cary-Blair or Para-Pak C and S)

Specimen Volume: Representative portion of feces; 5 mL

Collection Instructions:

1. Collect fresh fecal specimen and submit in container with transport medium.

2. Within 2 hours of collection, place feces in preservative.

Specimen Stability Information: Ambient (preferred) <5 days/Refrigerated <5 days

 

Acceptable:

Specimen Type: Unpreserved feces

Supplies:

-Stool container, Small (Random), 4 oz Random (T288)

-Stool Collection Kit, Random (T635)

Container/Tube: Fecal container

Specimen Volume: Representative portion of feces

Collection Instructions: Collect fresh fecal specimen and submit representative sample in fecal container.

Specimen Stability Information: Refrigerated (preferred) <5 days/Frozen <5 days


Useful For

Sensitive, specific, and rapid diagnosis of Clostridioides (Clostridium) difficile-associated diarrhea and pseudomembranous colitis

 

The test is not recommended as a test of cure.

Testing Algorithm

For more information see Laboratory Testing for Infectious Causes of Diarrhea.

Reporting Name

C. difficile Toxin, PCR, F

Specimen Type

Fecal

Specimen Minimum Volume

See Specimen Required

Specimen Stability Information

Specimen Type Temperature Time
Fecal Varies 5 days

Reject Due To

Feces in gel transport medium
ECOFIX preservative
Formalin or polyvinyl acetate (PVA) fixative
Preserved feces received frozen
Reject

Reference Values

Negative

Method Description

Test is performed on the Cepheid GeneXpert Dx System, which automates and integrates sample purification, nucleic acid amplification, and detection of the target sequence in simple or complex samples using real-time polymerase chain reaction (PCR) and reverse transcription PCR assays. The system requires the use of single-use disposable cartridges that hold the PCR reagents and host the PCR process. Because the cartridges are self-contained, cross-contamination between samples is eliminated.

 

The Cepheid Xpert C difficile/Epi Assay is a qualitative in vitro diagnostic test for rapid detection of toxin B gene sequences and for presumptive identification of 027/NAP1/BI strains of toxigenic Clostridioides (Clostridium) difficile from patients suspected of having C difficile infection (CDI). Presumptive identification of 027/NAP1/BI strains of C difficile is by detection of binary toxin gene sequences and the single base pair deletion at nucleotide 117 in the tcdC gene. The tcdC gene encodes for a negative regulator in C difficile toxin production.

 

The Xpert C difficile/Epi Assay is intended as an aid in the diagnosis of CDI. Detection of 027/NAP1/BI strains of C difficile by the Xpert C difficile/Epi Assay is presumptive and is solely for epidemiological purposes and is not intended to guide or monitor treatment for C difficile infections. Concomitant culture is necessary only if further typing or organism recovery is required.(Package insert: Xpert C difficile /Epi. Cepheid; Rev. J, 04/2020)

Day(s) Performed

Monday through Sunday

Report Available

Same day/1 day

Specimen Retention Time

7 days

Performing Laboratory

Mayo Clinic Laboratories in Rochester

CPT Code Information

87493

LOINC Code Information

Test ID Test Order Name Order LOINC Value
CDPCR C. difficile Toxin, PCR, F 54067-4

 

Result ID Test Result Name Result LOINC Value
TCDRR C. difficile Toxin, PCR 54067-4

Forms

If not ordering electronically, complete, print, and send 1 of the following with the specimen:

-Microbiology Test Request (T244)

-Gastroenterology and Hepatology Test Request (T728)